a) Determination of atom types in arbitrary molecules, including non-standard residues.f) ability to save high-resolution images for presentation and publication and stereo (side-by-side and time-sequential).e) Interactive color editing in various color spaces (RGB, CMYK, etc.) with transparency and.d) Side View for adjusting clipping planes and scaling.
c) Highly intuitive rotation, translation, and scaling with the mouse.a) Stick, ball-and-stick, CPK, ribbon, pipe-and-plank, and nucleotide display styles.The morph can then be saved in coordinate form or recorded as an animation.
Chimera software movie#
The result is displayed in Chimera’s trajectory viewer, MD Movie (MD Movie - is a tool for viewing and analysis of trajectories and other ensembles). Users can specify the method of coordinate interpolation and how many intermediate structures should be generated. Morphing - Different conformations and even different proteins can be compared, by morphing from one structure to another.
Secondary structure elements can be depicted as colored boxes or regions on the alignment. Various measures of sequence conservation and structural variation (RMSD) can be computed and shown above the sequences as histograms, and on the structures with color or worm radius. Structures opened in Chimera are automatically associated with sufficiently similar sequences in the alignment.Īfter association, mousing over a residue in the sequence shows its structure residue number, selecting in the sequence selects residues in the structure(s) and vice versa, structures can be superimposed using sequence alignment. Sequence alignments can be read from external files or created by other tools in Chimera. Sequence Viewer - The “Multalign Viewer” tool displays individual sequences and multiple sequence alignments. High-quality images and animations can be generated. It can be used for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. It does not store any personal data.Category Proteomics>Protein Structure/Modeling Systems/ToolsĪbstract UCSF Chimera is an molecular modeling system. The cookie is set by the GDPR Cookie Consent plugin and is used to store whether or not user has consented to the use of cookies. The cookie is used to store the user consent for the cookies in the category "Performance". This cookie is set by GDPR Cookie Consent plugin. The cookie is used to store the user consent for the cookies in the category "Other. The cookies is used to store the user consent for the cookies in the category "Necessary". The cookie is set by GDPR cookie consent to record the user consent for the cookies in the category "Functional". The cookie is used to store the user consent for the cookies in the category "Analytics". These cookies ensure basic functionalities and security features of the website, anonymously. Necessary cookies are absolutely essential for the website to function properly.
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